Methods developed for mapping the journal structures contained in aggregated journal-journal citations in the Science Citation Index are applied to the Chinese Science Citation Database of the Chinese Academy of Sciences. This database covers 991 journals, of which only 37 had originally English titles. Using factor-analytical and graph-analytical techniques we show that this data is dually structured. The main structure is the intellectual organization of the journals in journal groups (as in the international SCI), but the university-based journals provide an institutional layer that orients this structure towards practical ends (e.g., agriculture). The Chinese Science Citation Database exhibits the characteristics of “Mode 2” in the production of scientific knowledge more than its western counterparts. The context of application leads to correlation (interfactorial complexity) among the components.